Years later, the Federation would resurface as part of the Confederacy of Independent Systems, fighting against the Republic in the Clone Wars. They were incredibly well armed, with all their seemingly limitless financing and equally well funded allies. Ultimately, the Trade Federation collapsed with Nute Gunray's death at the hands of Darth Vader. Their resources were turned over to the Emperor, and trade was nationalized.
The Trade Federation's capital world was Neimoidia, but its purse worlds were Cato Neimoidia, Deko Neimoidia, and Koru Neimoidia. They also had bases or influence on Geonosis, Mustafar, Maramere, Lok, Nod Kartha, Caarimon, Filordia, and Cularin.